Open source · Shared knowledge
Portfolio
01 / Biomedical data
Gen3
Gen3 is an open-source platform connecting biomedical data and research. We contribute to its software development.
02 / Cancer genomics
cBioPortal
Your infrastructure—or managed by SE4BIO
We help research teams deploy, maintain and use cBioPortal. We can operate within your existing infrastructure or run a dedicated instance on your behalf. Our services also include data loading and transformation, ongoing software maintenance, and training tailored to your team.
Aster Insights describes our work deploying and maintaining updates to its cBioPortal instance for ORIEN. Rutgers Cancer Institute of New Jersey describes our work establishing its local cancer genomics portal, from server configuration to data integration.
Read the client testimonials · Explore the Co-pilot architecture
03 / Physical activity & sleep
GGIR
Vincent van Hees · Creator of GGIR
I created GGIR in 2013 as a generic solution to handle and analyse the data collected with modern accelerometers. GGIR would not be what it is today without the input I have received from other researchers and developers from around the world, who have provided valuable feedback and contributions in the validation of GGIR’s functionalities.
Open Source
GGIR comes with an open source license, which is essential for reproducible and transparent research. Although open source software is free to download and use, the time investment to professionally maintain it and to support users is not for free. Voluntary community efforts are valuable. SE4BIO provides commercial support around the user needs that are hard to address by voluntary efforts: dedicated support and substantial software or algorithm enhancements.
Paid consultations
Book focused GGIR support
Choose a 30-minute call for one focused question or an initial consultation. Choose an hour when you need more time to discuss a complex analysis, configuration, or support need.
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Insightful reports
Quantitative reports are generated on data quality and to describe patterns in movements and sleep. Complementary to these reports GGIR generates several visualisations to facilitate additional quality assurance and to aid interpretation of the quantitative reports.
04 / Custom software
Custom software
When an existing platform doesn’t fit your science, we build what does. We work with your domain experts to turn a research question, prototype or pipeline into software your team can rely on: secure, stable and maintained.
How we work
- Assess. We review your prototype, data and goals, and agree what “production-ready” means for your case.
- Build. Full-stack development and data workflows, designed with your domain experts.
- Harden. Testing, security, compliance and deployment practices suited to your data and users.
- Support. Maintenance, training and dedicated support, so the software lasts beyond the project.